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d3js multi-line scatterplot zoom

I am working on a multi-line scatterplot with zoom using d3 v6. I am new to d3 and based on different examples, I could get the zoom function working for the images/points. The problem is that the lines aren't zooming. I looked at many similar questions, but none of those solutions are working for me.
The code I am using:
var margin = {
top: 50,
right: 30,
bottom: 30,
left: 210,
};
var svg = d3.select("svg"),
width = 1410 - margin.left - margin.right,
height = 620 - margin.top - margin.bottom;
svg
.append("defs")
.append("clipPath")
.attr("id", "clip")
.append("rect")
.attr("width", width)
.attr("height", height);
d3.csv("CSV_files/NSW_pathway.csv").then(function (data1) {
var groupData = d3.group(data1, (d) => d.pathway_name);
var xScale = d3.scaleLinear().domain([0, 1]).range([0, width]);
var yScale = d3.scaleLinear().domain([0, 1]).range([height, 0]);
var xAxis = d3.axisBottom(xScale).ticks(0).tickSize(-height);
var yAxis = d3.axisLeft(yScale).ticks(0).tickSize(-width);
var gX = svg
.append("g")
.attr(
"transform",
"translate(" + margin.left + "," + (margin.top + height) + ")"
)
.call(xAxis);
var gY = svg
.append("g")
.attr("transform", "translate(" + margin.left + "," + margin.top + ")")
.call(yAxis);
var focus = svg
.append("g")
.attr("transform", "translate(" + margin.left + "," + margin.top + ")")
.attr("class", "line")
.attr("clip-path", "url(#clip)");
const color = d3
.scaleOrdinal()
.range(["#e41a1c", "#377eb8", "#4daf4a", "#984ea3"]);
var points_g = svg
.append("g")
.attr("transform", "translate(" + margin.left + "," + margin.top + ")")
.attr("clip-path", "url(#clip)")
.classed("points_g", true);
var label = svg
.append("g")
.attr("transform", "translate(" + margin.left + "," + margin.top + ")")
.attr("class", "label")
.attr("clip-path", "url(#clip)");
var div = d3
.select("body")
.append("div")
.attr("class", "tooltip")
.style("opacity", 0);
const mouseover = function (event, d) {
div.style("opacity", 1);
};
const mousemove = function (event, d) {
div
.html(function (d1) {
if (d.type != "learner")
return `The resource name is ${d.resource_name}`;
else return `This is ${d.name}`;
})
.style("position", "absolute")
.style("left", event.pageX + 15 + "px")
.style("top", event.pageY + 15 + "px");
};
const mouseleave = function (event, d) {
div.transition().duration(200).style("opacity", 0);
};
var points = points_g.selectAll("point").data(data1);
points = points
.enter()
.append("image")
.attr("xlink:href", function (d) {
if (d.type == "video") return "Images/3.jpg";
else if (d.type == "pdf") return "Images/4.png";
else if (d.type == "none") return "Images/5.png";
})
.attr("x", function (d) {
return xScale(+d.x) - 10;
})
.attr("y", function (d) {
return yScale(+d.y) - 10;
})
.attr("width", 20)
.attr("height", 20)
.on("mouseover", mouseover)
.on("mousemove", mousemove)
.on("mouseleave", mouseleave);
label
.selectAll(".text")
.data(data1)
.enter()
.append("text")
.text(function (d) {
return d.topic;
})
.attr("x", function (d) {
return xScale(+d.x) + 10;
})
.attr("y", function (d) {
return yScale(+d.y) + 10;
});
focus
.selectAll("line")
.data(groupData)
.enter()
.append("path")
.attr("fill", "none")
.attr("stroke", function (d) {
return color(d[0]);
})
.attr("stroke-width", 1)
.attr("d", function (d) {
return d3
.line()
.curve(d3.curveMonotoneX)
.x(function (d) {
return xScale(+d.x);
})
.y(function (d) {
return yScale(+d.y);
})(d[1]);
});
var zoom = d3
.zoom()
.scaleExtent([0.5, 20])
.extent([
[0, 0],
[width, height],
])
.on("zoom", zoomed);
svg
.append("rect")
.attr("width", width)
.attr("height", height)
.style("fill", "none")
.attr("transform", "translate(" + margin.left + "," + margin.top + ")")
.lower();
svg.call(zoom).call(zoom.transform, d3.zoomIdentity);
function zoomed({ transform }) {
var new_xScale = transform.rescaleX(xScale);
var new_yScale = transform.rescaleY(yScale);
gX.call(xAxis.scale(new_xScale));
gY.call(yAxis.scale(new_yScale));
points
.data(data1)
.attr("x", function (d) {
return new_xScale(d.x) - 10;
})
.attr("y", function (d) {
return new_yScale(d.y) - 10;
});
label
.selectAll("text")
.data(data1)
.attr("x", function (d) {
return new_xScale(d.x) + 15;
})
.attr("y", function (d) {
return new_yScale(d.y) + 15;
});
focus.selectAll("line").attr("d", function (d) {
return d3
.line()
.curve(d3.curveMonotoneX)
.x(function (d) {
return xScale(+d.x);
})
.y(function (d) {
return yScale(+d.y);
})(d[1]);
});
}
});
A sample of the csv file:
x,y,name,type,topic,resource_name,pathway_name
0,0,start,none,Sponsored Search Markets,Networks Crowd and Markets_NCMch15.pdf,pathwayOne
0,0,start,none,Sponsored Search Markets,Networks Crowd and Markets_NCMch15.pdf,pathwayTwo
0.086511627906977,0.16,horse,pdf,Graphs,Networks Crowd and Markets_NCMch2.pdf,pathwayOne
0.12,0.283768436578171,choice,pdf,Network Centrality,Notes_CGT BASED network CENTRALITY - L2.pdf,pathwayTwo
0.32,0.27217943628424,plex,video,Network Models,Network Analysis_LNch13.pdf,pathwayOne
0.775398773006135,0.33,social,pdf,Clustering,Network Analysis_LNch8.pdf,pathwayTwo
1,1,end,none,Allocation in Networks,Notes_Allocation in networks with DON-L3.pdf,pathwayOne
1,1,end,none,Allocation in Networks,Notes_Allocation in networks with DON-L3.pdf,pathwayTwo
Thank you for your help.

It's not zooming the whole page, it's zooming the whole svg, your large margins extend beyond the charting area. One solution is to add the g element not on your svg but only on your chart area.
But using your code, there are 2 things preventing your lines from zooming.
1: your selection is empty - line is a d3 abstraction that returns a path
function zoomed() {
...
// empty selection
console.log(focus.selectAll('line'))
// try instead
console.log(focus.selectAll('path'))
}
2: Simple mistake - you're using the old scale not the new one
function zoomed() {
...
focus.selectAll('path').attr('d', d => {
return d3.line()
// using old scale
.x(di => xScale(+di.x))
// change to
.x(di => new_xScale(+di.x))
})
}

I don't have a sample of your csv file so this isn't tested, but if you want to zoom the whole chart just add a parent g after your svg and transform that..
...
svg
.append("defs")
.append("clipPath")
.attr("id", "clip")
.append("rect")
.attr("width", width)
.attr("height", height);
// NEW - add g
.append('g')
// NEW - adjust scaleExtent to your needs
const zoom = d3.zoom()
.scaleExtent([1, 8])
.on('zoom', updateChart)
svg.call(zoom)
function updateChart(event) {
svg.attr('transform', event.transform)
}
Note that this also adds pan, but if you only want zoom you can use:
let scale = 1
...
function updateChart(event) {
if(event.transform.k === scale) { return }
svg.attr('transform', event.transform)
scale = event.transform.k
}

How to make a moving transition of points from a to b

I have a scatterplot and I have two different sets of datapoints I am visualizing from the dataset. I want to animate the path from "red" to "blue" dots and show them like the blue point is moving from the red and getting its position. Is that possible with d3, and if so how can I do this?
The scatterplot I have currently with the plotted points is here.
this is how I draw both sets of datapoints in the scatterplot:
// blue dots
svg.append('g')
.selectAll("dot")
.data(data)
.enter()
.append("circle")
.attr("cx", function (d) { return x(d.x); } )
.attr("cy", function (d) { return y(d.y); } )
.attr("r", 4.1)
.transition()
.style("fill", "blue")
// red dots
svg.append('g')
.selectAll("dot")
.data(data)
.enter()
.append("circle")
.attr("cx", function (d) { return x(d.x1); } )
.attr("cy", function (d) { return y(d.y1); } )
.attr("r", 4.1)
.style("fill", "red")
}
Thank you for any kind of help in advance!

Yes it's possible.
Using the property transition and combining with duration in milliseconds. Look below:
https://jsfiddle.net/mathyaku/L5bpaxwv/1/
function drawScatterplot(data, selector) {
// set the dimensions and margins of the graph
var margin = { top: 10, right: 30, bottom: 30, left: 60 },
width = 700 - margin.left - margin.right,
height = 700 - margin.top - margin.bottom;
// append the svg object to the body of the page
var svg = d3.select(selector)
.append("svg")
.attr("width", width + margin.left + margin.right)
.attr("height", height + margin.top + margin.bottom)
.append("g")
.attr("transform",
"translate(" + margin.left + "," + margin.top + ")");
//Read the data
// Add X axis
var x = d3.scaleLinear()
.domain([0, 1])
.range([0, width]);
svg.append("g")
.attr("transform", "translate(0," + height + ")")
.call(d3.axisBottom(x));
// Add Y axis
var y = d3.scaleLinear()
.domain([0, 1])
.range([height, 0]);
svg.append("g")
.call(d3.axisLeft(y));
// Add red dots
svg.append('g')
.selectAll("dot")
.data(data)
.enter()
.append("circle")
.attr("cx", function (d) { return x(d.x1); })
.attr("cy", function (d) { return y(d.y1); })
.attr("r", 4.1)
.style("fill", "red")
svg.selectAll("circle")
.transition()
.duration(2000)
.attr("cx", function (d) { return x(d.x); })
.attr("cy", function (d) { return y(d.y); })
.style("fill", "blue")
}
drawScatterplot(data, '#Scatterplot');

Why the graph lines are off axis Y and X?

I am having trouble creating a chart with a simple line.
I'll put here my code and an image of how the line is getting off axis Y and X. I really have no idea why this is happening.
Chart:
HTML:
<div id="myChart"></div>
JavaScript:
Function to adjust my json only with the data I need:
var reduceVendedores = vendedores.reduce(function (allSales, sales) {
if (allSales.some(function (e) {
return e.vendnm === sales.vendnm;
})) {
allSales.filter(function (e) {
return e.vendnm === sales.vendnm
})[0].Vendas_Ano += sales.Vendas_Ano;
allSales.filter(function (e) {
return e.vendnm === sales.vendnm
})[0].Vendas_Ant += sales.Vendas_Ant
} else {
allSales.push({
vendnm: sales.vendnm,
Vendas_Ano: sales.Vendas_Ano,
Vendas_Ant: sales.Vendas_Ant
})
}
return allSales;
}, []);
Defining X and Y Axes of the Chart:
var margin = { top: 30, right: 30, bottom: 70, left: 60 },
width = 600 - margin.left - margin.right,
height = 600 - margin.top - margin.bottom;
function getMax() {
return reduceVendedores.map(d => d.Vendas_Ano)
}
var svg = d3.select("#myChart")
.append("svg")
.attr("width", width)
.attr("height", height);
var xscale = d3.scaleBand()
.range([0, width - 100])
.domain(reduceVendedores.map(function (d) { return d.vendnm; }))
var yscale = d3.scaleLinear()
.domain([0, d3.max(getMax()) + 30000])
.range([height / 2, 0]);
var x_axis = d3.axisBottom().scale(xscale);
var y_axis = d3.axisLeft().scale(yscale);
svg.append("g")
.attr("transform", "translate(50, 10)")
.call(y_axis);
var xAxisTranslate = height / 2 + 10;
svg.append("g")
.attr("transform", "translate(50, " + xAxisTranslate + ")")
.call(d3.axisBottom(xscale))
.selectAll("text")
.attr("transform", "translate(-10,0)rotate(-45)")
.style("text-anchor", "end");
Defining the chart line:
svg.append("path")
.datum(reduceVendedores)
.attr("fill", "none")
.attr("stroke", "steelblue")
.attr("stroke-width", 1.5)
.attr("d", d3.line()
.x(function (d) { return xscale(d.vendnm); })
.y(function (d) { return yscale(d.Vendas_Ano) })
)

You're not adjusting for the margins you gave to your axis with:
.attr("transform", "translate(50, 10)")
Try:
svg.append('g')
.attr('transform','translate(50,0)')
.append("path")
.datum(reduceVendedores)
.attr("fill", "none")
.attr("stroke", "steelblue")
.attr("stroke-width", 1.5)
.attr("d", d3.line()
.x(function (d) { return xscale(d.vendnm); })
.y(function (d) { return yscale(d.Vendas_Ano) })
)
Typically you'd set your margin in svg, like:
var svg = d3.select("#myChart")
.append("svg")
.attr("width", width)
.attr("height", height)
.append('g')
.attr('transform','translate(' + margin.left + ',' + margin.top + ')')
But doing so know would ruin the alignment of your axis.

How to scale y-Axis in d3.js according to data input correctly

I created a small Barchart. My problem is that the y-axis doesn't scale according to my dataset. Here is a screenshot:
So as you can see the 313 is a little bit above the 800 scale. I would like the 300 to be at the 300. I tweaked with the scalings but I just end up messing it up completely. I am very new to D3.js so I hope someone can help.
Here is my code:
var svgWidth = 1000, svgHeight = 800;
var barWidth = svgWidth / month_description.length;
var barPadding = 5;
var svg = d3.select('svg')
.attr("width", svgWidth)
.attr("height", svgHeight);
var barChart = svg.selectAll("rect")
.data(data)
.enter()
.append("rect")
.attr("y", function(d) {
return svgHeight - d - 20
})
.attr("x", function(d, i) {
return i + 10;
})
.attr("height", function(d) {
return d;
})
.attr("width", barWidth - barPadding)
.attr("class", "bar")
.attr("transform", function (d, i) {
var translate = [barWidth * i, 0];
return "translate("+ translate +")";
});
var text = svg.selectAll("text")
.data(data)
.enter()
.append("text")
.text(function(d) {
return d;
})
.attr("y", function(d, i) {
return svgHeight - 20;
})
.attr("x", function(d, i) {
return barWidth * i + 35;
})
.attr("fill", "white");
var xScale = d3.scaleLinear()
.domain([0, d3.max(month_description)])
.range([0, svgWidth]);
var yScale = d3.scaleLinear()
.domain([0, d3.max(data)])
.range([svgHeight, 0]);
var x_axis = d3.axisBottom()
.scale(xScale);
var y_axis = d3.axisLeft()
.scale(yScale);
svg.append("g")
.attr("transform", "translate(50, 10)")
.call(y_axis);
var xAxisTranslate = svgHeight - 20;
svg.append("g")
.attr("transform", "translate(50, " + xAxisTranslate +")")
.call(x_axis);
Help is very much appreciated. Thanks very much in advance!!

D3 the x axis positions in wrong way

I have run into problem of displaying the chart X axis which is translated in wrong position. Here is my example http://jsfiddle.net/staar2/Vww3h/1/.
As you can look from the html inspector the svg elements get translated wrong. What I think the xScale are set wrong.
var data = JSON.parse('[{"hour":0,"time":147},{"hour":1,"time":0},{"hour":2,"time":74},{"hour":3,"time":141},{"hour":4,"time":137},{"hour":5,"time":210},{"hour":6,"time":71},{"hour":7,"time":73},{"hour":8,"time":0},{"hour":9,"time":68},{"hour":10,"time":70},{"hour":11,"time":0},{"hour":12,"time":147},{"hour":13,"time":0},{"hour":14,"time":0},{"hour":15,"time":69},{"hour":16,"time":67},{"hour":17,"time":67},{"hour":18,"time":66},{"hour":19,"time":0},{"hour":20,"time":0},{"hour":21,"time":66},{"hour":22,"time":210},{"hour":23,"time":0}] ');
var w = 15,
h = 80;
var xScale = d3.scale.linear()
.domain([0, 1])
.range([0, w]);
var yScale = d3.scale.linear()
.domain([0, d3.max(data, function (d) {
return d.time;
})])
.rangeRound([5, h]);
var xAxis = d3.svg.axis()
.scale(xScale)
.orient("bottom")
.ticks(5);
var yAxis = d3.svg.axis()
.scale(yScale)
.orient("left");
var chart = d3.select("#viz")
.append("svg")
.attr("class", "chart")
.attr("width", w * data.length - 1)
.attr("height", h);
chart.selectAll("rect")
.data(data)
.enter().append("rect")
.attr("x", function(d, i) {
return xScale(i) - 0.5;
})
.attr("y", function(d) {
return h - yScale(d.time) - 0.5;
})
.attr("width", w)
.attr("height", function(d) {
return yScale(d.time);
});
chart.selectAll("text")
.data(data)
.enter()
.append("text")
.text(function(d) {
if (d.time > 10) {
return Math.round(d.time);
}
})
.attr("font-family", "sans-serif")
.attr("font-size", "11px")
.attr("fill", "#FFF")
.attr("text-anchor", "middle")
.attr("x", function(d, i) {
return xScale(i) + w / 2;
})
.attr("y", function(d) {
return h - yScale(d.time) - 0.5 + 10;
});
chart.append("g")
.attr("transform", "translate(0," + (h) + ")")
.call(xAxis);

You need to change your xScale domain and range as well accordingly, as
xScale
.domain([0, data.length-1])
.range([0, w*(data.length-1)])
while you call xScale(i) where i is the index of data element, as far as i understood, and so the domain should be between 0 - data.length.