Automating embed content in Internet Explorer using Selenium - javascript

Table I am trying to access
I am trying to access a table on a webpage that lies in an embed tag. I'm unable to access (I need to check/uncheck the checkboxes) the table using Internet Explorer. The code works fine in Firefox and Chrome.
The HTML content is as below
My problem is that in IE I can't find any contents of the table even with page source or inspect element, so I can't do anything with my table.

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http://www.measureraajje.com/
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HOW IT SHOULD WORK:
The user should select an atoll first... then the adjacent combobox should display a list of islands.
After selecting 2 islands. the user will have to press add route... then the route will be added and the result will be displayed in the table below.

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