Read Data from JSON file using d3.js - javascript

I am new to d3.js and I am trying to reproduce the example B is for breaking links in this tutorial.
As you can see in the jsfiddle of this example, the data is read from a <script type="application/json" id="mis"> tag, but what I want is to read it from a different file.
I used the d3.json() function as suggested in this Force-Layout example, but when I added the threshold slider which is supposed to break my links, nothing happens.
When I ran the console, it gave me the following error :
Uncaught TypeError: Cannot read property 'splice' of
undefined
threshold # index.html:82
onchange # index.html:101
This is my code :
output.json
The file output.json is in this link.
index.html
<!DOCTYPE html>
<meta charset="utf-8">
<style>
.node {
stroke: #fff;
stroke-width: 1.5px;
}
.link {
stroke: #999;
stroke-opacity: .6;
}
h3 {
color: #1ABC9C;
text-align:center;
font-style: italic;
font-size: 14px;
font-family: "Helvetica";
}
</style>
<body>
<script src="//d3js.org/d3.v3.min.js"></script>
<script>
var width = 960,
height = 500;
var color = d3.scale.category20();
var force = d3.layout.force()
.charge(-120)
.linkDistance(30)
.size([width, height]);
var svg = d3.select("body").append("svg")
.attr("width", width)
.attr("height", height);
var graph = d3.json("output.json", function(error, graph) {
if (error) throw error;
graphRec=JSON.parse(JSON.stringify(graph));
force
.nodes(graph.nodes)
.links(graph.links)
.start();
var link = svg.selectAll(".link")
.data(graph.links)
.enter().append("line")
.attr("class", "link")
.style("stroke-width", function(d) { return Math.sqrt(d.value); });
var node = svg.selectAll(".node")
.data(graph.nodes)
.enter().append("circle")
.attr("class", "node")
.attr("r", 5)
.style("fill", function(d) { return color(d.group); })
.call(force.drag);
node.append("title")
.text(function(d) { return d.name; });
force.on("tick", function() {
link.attr("x1", function(d) { return d.source.x; })
.attr("y1", function(d) { return d.source.y; })
.attr("x2", function(d) { return d.target.x; })
.attr("y2", function(d) { return d.target.y; });
node.attr("cx", function(d) { return d.x; })
.attr("cy", function(d) { return d.y; });
});
});
//adjust threshold
function threshold(thresh) {
graph.links.splice(0, graph.links.length);
for (var i = 0; i < graphRec.links.length; i++) {
if (graphRec.links[i].value > thresh) {graph.links.push(graphRec.links[i]);}
}
restart();
}
//Restart the visualisation after any node and link changes
function restart() {
link = link.data(graph.links);
link.exit().remove();
link.enter().insert("line", ".node").attr("class", "link");
node = node.data(graph.nodes);
node.enter().insert("circle", ".cursor").attr("class", "node").attr("r", 5).call(force.drag);
force.start();
}
</script>
<form>
<h3> Link threshold 0 <input type="range" id="thersholdSlider" name="points" value = 0 min="0" max="10" onchange="threshold(this.value)"> 10 </h3>
</form>
What did I do wrong ? And how can I fix it ?
Thanks!


I could not find any bugs in your code. The only problem I could find is that the variable name graph used twice.
var graph = d3.json("output.json", function(error, graph) {
---------------------
---------------------
});
Edit: Try this code.
var graphRec, node, link;
d3.json("output.json", function(error, graph) {
if (error) throw error;
graph = JSON.parse(JSON.stringify(graph));
force
.nodes(graph.nodes)
.links(graph.links)
.start();
graphRec = graph;
link = svg.selectAll(".link")
.data(graph.links)
.enter().append("line")
.attr("class", "link")
.style("stroke-width", function(d) { return Math.sqrt(d.value); });
node = svg.selectAll(".node")
.data(graph.nodes)
.enter().append("circle")
.attr("class", "node")
.attr("r", 5)
.style("fill", function(d) { return color(d.group); })
.call(force.drag);
------------------------
------------------------
});
//adjust threshold
function threshold(thresh) {
graphRec.links.splice(0, graphRec.links.length);
for (var i = 0; i < graphRec.links.length; i++) {
if (graphRec.links[i].value > thresh) {graphRec.links.push(graphRec.links[i]);}
}
restart();
}
//Restart the visualisation after any node and link changes
function restart() {
link = link.data(graphRec.links);
link.exit().remove();
link.enter().insert("line", ".node").attr("class", "link");
node = node.data(graphRec.nodes);
node.enter().insert("circle", ".cursor").attr("class", "node").attr("r", 5).call(force.drag);
force.start();
}
Working Code Snippet.
var width = 960,
height = 500;
var color = d3.scale.category20();
var force = d3.layout.force()
.charge(-120)
.linkDistance(30)
.size([width, height]);
var svg = d3.select("body").append("svg")
.attr("width", width)
.attr("height", height);
var graph = {"nodes":[{"name":"DOU,_H.","group":1},{"name":"QUONIAM","group":1},{"name":"DA_SILV","group":1},{"name":"GUIMARA","group":1},{"name":"SOARES_","group":0}],"links":[{"source":1,"target":0,"value":19,"oriented":false,"date":null},{"source":1,"target":2,"value":2,"oriented":false,"date":null},{"source":1,"target":3,"value":1,"oriented":false,"date":null},{"source":1,"target":4,"value":1,"oriented":false,"date":null},{"source":1,"target":3,"value":2,"oriented":false,"date":null}]};
graph = JSON.parse(JSON.stringify(graph));
force
.nodes(graph.nodes)
.links(graph.links)
.start();
graphRec = graph;
var link = svg.selectAll(".link")
.data(graph.links)
.enter().append("line")
.attr("class", "link")
.style("stroke-width", function(d) {
return Math.sqrt(d.value);
});
var node = svg.selectAll(".node")
.data(graph.nodes)
.enter().append("circle")
.attr("class", "node")
.attr("r", 5)
.style("fill", function(d) {
return color(d.group);
})
.call(force.drag);
node.append("title")
.text(function(d) {
return d.name;
});
force.on("tick", function() {
link.attr("x1", function(d) {
return d.source.x;
})
.attr("y1", function(d) {
return d.source.y;
})
.attr("x2", function(d) {
return d.target.x;
})
.attr("y2", function(d) {
return d.target.y;
});
node.attr("cx", function(d) {
return d.x;
})
.attr("cy", function(d) {
return d.y;
});
});
//adjust threshold
function threshold(thresh) {
graph.links.splice(0, graph.links.length);
for (var i = 0; i < graphRec.links.length; i++) {
if (graphRec.links[i].value > thresh) {
graph.links.push(graphRec.links[i]);
}
}
restart();
}
//Restart the visualisation after any node and link changes
function restart() {
link = link.data(graph.links);
link.exit().remove();
link.enter().insert("line", ".node").attr("class", "link");
node = node.data(graph.nodes);
node.enter().insert("circle", ".cursor").attr("class", "node").attr("r", 5).call(force.drag);
force.start();
}
.node {
stroke: #fff;
stroke-width: 1.5px;
}
.link {
stroke: #999;
stroke-opacity: .6;
}
h3 {
color: #1ABC9C;
text-align:center;
font-style: italic;
font-size: 14px;
font-family: "Helvetica";
}
<script src="https://cdnjs.cloudflare.com/ajax/libs/d3/3.4.11/d3.min.js"></script>
<form>
<h3> Link threshold 0 <input type="range" id="thersholdSlider" name="points" value = 0 min="0" max="10" onchange="threshold(this.value)"> 10 </h3>
</form>

Related

How to search for a certain node based on the name?

I got a force directed graph in D3.js based on this simple example:
https://bl.ocks.org/mbostock/950642
Now, i added in the CSS part a field to type in some text. My goal is to build a kind of a search box to find nodes based on their names. That means, if i type in "Joly", then the node with that name should be highlighted.
The question is how to solve this problem?
<style>
input[type=text] {
width: 100%;
padding: 12px 20px;
margin: 8px 0;
box-sizing: border-box;
border: 2px solid red;
border-radius: 4px;
}
</style>
</head>
<body>
<p>Text fields with borders:</p>
<form>
<label for="fname">Some Input</label>
<input type="text" id="fname" name="fname">
</form>
<script src="//d3js.org/d3.v3.min.js"></script>
<script>
var width = 960,
height = 500
var svg = d3.select("body").append("svg")
.attr("width", width)
.attr("height", height);
var force = d3.layout.force()
.gravity(0.05)
.distance(100)
.charge(-100)
.size([width, height]);
d3.json("graph.json", function(error, json) {
if (error) throw error;
force
.nodes(json.nodes)
.links(json.links)
.start();
var link = svg.selectAll(".link")
.data(json.links)
.enter().append("line")
.attr("class", "link");
var node = svg.selectAll(".node")
.data(json.nodes)
.enter().append("g")
.attr("class", "node")
.call(force.drag);
node.append("image")
.attr("xlink:href", "https://github.com/favicon.ico")
.attr("x", -8)
.attr("y", -8)
.attr("width", 16)
.attr("height", 16);
node.append("text")
.attr("dx", 12)
.attr("dy", ".35em")
.text(function(d) { return d.name });
force.on("tick", function() {
link.attr("x1", function(d) { return d.source.x; })
.attr("y1", function(d) { return d.source.y; })
.attr("x2", function(d) { return d.target.x; })
.attr("y2", function(d) { return d.target.y; });
node.attr("transform", function(d) { return "translate(" + d.x + "," + d.y + ")"; });
});
});
</script>

Search through all the nodes and check the name data value for each node.
d3.select("#fname").on("input", function() {
var inputValue = this.value;
node.each(function (d) {
var highLight = "black";
if(d.name.toLowerCase() == inputValue.toLowerCase()) highLight = "red";
d3.select(this).style("fill", highLight);
});
});
var width = 960,
height = 500
var svg = d3.select("body").append("svg")
.attr("width", width)
.attr("height", height);
var force = d3.layout.force()
.gravity(0.05)
.distance(100)
.charge(-100)
.size([width, height]);
var json = {"nodes":[{"name":"Myriel","group":1},{"name":"Napoleon","group":1},{"name":"Mlle.Baptistine","group":1},{"name":"Mme.Magloire","group":1},{"name":"CountessdeLo","group":1},{"name":"Geborand","group":1},{"name":"Champtercier","group":1},{"name":"Cravatte","group":1},{"name":"Count","group":1},{"name":"OldMan","group":1},{"name":"Labarre","group":2},{"name":"Valjean","group":2},{"name":"Marguerite","group":3},{"name":"Mme.deR","group":2},{"name":"Isabeau","group":2},{"name":"Gervais","group":2},{"name":"Tholomyes","group":3},{"name":"Listolier","group":3},{"name":"Fameuil","group":3},{"name":"Blacheville","group":3},{"name":"Favourite","group":3},{"name":"Dahlia","group":3},{"name":"Zephine","group":3},{"name":"Fantine","group":3},{"name":"Mme.Thenardier","group":4},{"name":"Thenardier","group":4},{"name":"Cosette","group":5},{"name":"Javert","group":4},{"name":"Fauchelevent","group":0},{"name":"Bamatabois","group":2},{"name":"Perpetue","group":3},{"name":"Simplice","group":2},{"name":"Scaufflaire","group":2},{"name":"Woman1","group":2},{"name":"Judge","group":2},{"name":"Champmathieu","group":2},{"name":"Brevet","group":2},{"name":"Chenildieu","group":2},{"name":"Cochepaille","group":2},{"name":"Pontmercy","group":4},{"name":"Boulatruelle","group":6},{"name":"Eponine","group":4},{"name":"Anzelma","group":4},{"name":"Woman2","group":5},{"name":"MotherInnocent","group":0},{"name":"Gribier","group":0},{"name":"Jondrette","group":7},{"name":"Mme.Burgon","group":7},{"name":"Gavroche","group":8},{"name":"Gillenormand","group":5},{"name":"Magnon","group":5},{"name":"Mlle.Gillenormand","group":5},{"name":"Mme.Pontmercy","group":5},{"name":"Mlle.Vaubois","group":5},{"name":"Lt.Gillenormand","group":5},{"name":"Marius","group":8},{"name":"BaronessT","group":5},{"name":"Mabeuf","group":8},{"name":"Enjolras","group":8},{"name":"Combeferre","group":8},{"name":"Prouvaire","group":8},{"name":"Feuilly","group":8},{"name":"Courfeyrac","group":8},{"name":"Bahorel","group":8},{"name":"Bossuet","group":8},{"name":"Joly","group":8},{"name":"Grantaire","group":8},{"name":"MotherPlutarch","group":9},{"name":"Gueulemer","group":4},{"name":"Babet","group":4},{"name":"Claquesous","group":4},{"name":"Montparnasse","group":4},{"name":"Toussaint","group":5},{"name":"Child1","group":10},{"name":"Child2","group":10},{"name":"Brujon","group":4},{"name":"Mme.Hucheloup","group":8}],"links":[{"source":1,"target":0,"value":1},{"source":2,"target":0,"value":8},{"source":3,"target":0,"value":10},{"source":3,"target":2,"value":6},{"source":4,"target":0,"value":1},{"source":5,"target":0,"value":1},{"source":6,"target":0,"value":1},{"source":7,"target":0,"value":1},{"source":8,"target":0,"value":2},{"source":9,"target":0,"value":1},{"source":11,"target":10,"value":1},{"source":11,"target":3,"value":3},{"source":11,"target":2,"value":3},{"source":11,"target":0,"value":5},{"source":12,"target":11,"value":1},{"source":13,"target":11,"value":1},{"source":14,"target":11,"value":1},{"source":15,"target":11,"value":1},{"source":17,"target":16,"value":4},{"source":18,"target":16,"value":4},{"source":18,"target":17,"value":4},{"source":19,"target":16,"value":4},{"source":19,"target":17,"value":4},{"source":19,"target":18,"value":4},{"source":20,"target":16,"value":3},{"source":20,"target":17,"value":3},{"source":20,"target":18,"value":3},{"source":20,"target":19,"value":4},{"source":21,"target":16,"value":3},{"source":21,"target":17,"value":3},{"source":21,"target":18,"value":3},{"source":21,"target":19,"value":3},{"source":21,"target":20,"value":5},{"source":22,"target":16,"value":3},{"source":22,"target":17,"value":3},{"source":22,"target":18,"value":3},{"source":22,"target":19,"value":3},{"source":22,"target":20,"value":4},{"source":22,"target":21,"value":4},{"source":23,"target":16,"value":3},{"source":23,"target":17,"value":3},{"source":23,"target":18,"value":3},{"source":23,"target":19,"value":3},{"source":23,"target":20,"value":4},{"source":23,"target":21,"value":4},{"source":23,"target":22,"value":4},{"source":23,"target":12,"value":2},{"source":23,"target":11,"value":9},{"source":24,"target":23,"value":2},{"source":24,"target":11,"value":7},{"source":25,"target":24,"value":13},{"source":25,"target":23,"value":1},{"source":25,"target":11,"value":12},{"source":26,"target":24,"value":4},{"source":26,"target":11,"value":31},{"source":26,"target":16,"value":1},{"source":26,"target":25,"value":1},{"source":27,"target":11,"value":17},{"source":27,"target":23,"value":5},{"source":27,"target":25,"value":5},{"source":27,"target":24,"value":1},{"source":27,"target":26,"value":1},{"source":28,"target":11,"value":8},{"source":28,"target":27,"value":1},{"source":29,"target":23,"value":1},{"source":29,"target":27,"value":1},{"source":29,"target":11,"value":2},{"source":30,"target":23,"value":1},{"source":31,"target":30,"value":2},{"source":31,"target":11,"value":3},{"source":31,"target":23,"value":2},{"source":31,"target":27,"value":1},{"source":32,"target":11,"value":1},{"source":33,"target":11,"value":2},{"source":33,"target":27,"value":1},{"source":34,"target":11,"value":3},{"source":34,"target":29,"value":2},{"source":35,"target":11,"value":3},{"source":35,"target":34,"value":3},{"source":35,"target":29,"value":2},{"source":36,"target":34,"value":2},{"source":36,"target":35,"value":2},{"source":36,"target":11,"value":2},{"source":36,"target":29,"value":1},{"source":37,"target":34,"value":2},{"source":37,"target":35,"value":2},{"source":37,"target":36,"value":2},{"source":37,"target":11,"value":2},{"source":37,"target":29,"value":1},{"source":38,"target":34,"value":2},{"source":38,"target":35,"value":2},{"source":38,"target":36,"value":2},{"source":38,"target":37,"value":2},{"source":38,"target":11,"value":2},{"source":38,"target":29,"value":1},{"source":39,"target":25,"value":1},{"source":40,"target":25,"value":1},{"source":41,"target":24,"value":2},{"source":41,"target":25,"value":3},{"source":42,"target":41,"value":2},{"source":42,"target":25,"value":2},{"source":42,"target":24,"value":1},{"source":43,"target":11,"value":3},{"source":43,"target":26,"value":1},{"source":43,"target":27,"value":1},{"source":44,"target":28,"value":3},{"source":44,"target":11,"value":1},{"source":45,"target":28,"value":2},{"source":47,"target":46,"value":1},{"source":48,"target":47,"value":2},{"source":48,"target":25,"value":1},{"source":48,"target":27,"value":1},{"source":48,"target":11,"value":1},{"source":49,"target":26,"value":3},{"source":49,"target":11,"value":2},{"source":50,"target":49,"value":1},{"source":50,"target":24,"value":1},{"source":51,"target":49,"value":9},{"source":51,"target":26,"value":2},{"source":51,"target":11,"value":2},{"source":52,"target":51,"value":1},{"source":52,"target":39,"value":1},{"source":53,"target":51,"value":1},{"source":54,"target":51,"value":2},{"source":54,"target":49,"value":1},{"source":54,"target":26,"value":1},{"source":55,"target":51,"value":6},{"source":55,"target":49,"value":12},{"source":55,"target":39,"value":1},{"source":55,"target":54,"value":1},{"source":55,"target":26,"value":21},{"source":55,"target":11,"value":19},{"source":55,"target":16,"value":1},{"source":55,"target":25,"value":2},{"source":55,"target":41,"value":5},{"source":55,"target":48,"value":4},{"source":56,"target":49,"value":1},{"source":56,"target":55,"value":1},{"source":57,"target":55,"value":1},{"source":57,"target":41,"value":1},{"source":57,"target":48,"value":1},{"source":58,"target":55,"value":7},{"source":58,"target":48,"value":7},{"source":58,"target":27,"value":6},{"source":58,"target":57,"value":1},{"source":58,"target":11,"value":4},{"source":59,"target":58,"value":15},{"source":59,"target":55,"value":5},{"source":59,"target":48,"value":6},{"source":59,"target":57,"value":2},{"source":60,"target":48,"value":1},{"source":60,"target":58,"value":4},{"source":60,"target":59,"value":2},{"source":61,"target":48,"value":2},{"source":61,"target":58,"value":6},{"source":61,"target":60,"value":2},{"source":61,"target":59,"value":5},{"source":61,"target":57,"value":1},{"source":61,"target":55,"value":1},{"source":62,"target":55,"value":9},{"source":62,"target":58,"value":17},{"source":62,"target":59,"value":13},{"source":62,"target":48,"value":7},{"source":62,"target":57,"value":2},{"source":62,"target":41,"value":1},{"source":62,"target":61,"value":6},{"source":62,"target":60,"value":3},{"source":63,"target":59,"value":5},{"source":63,"target":48,"value":5},{"source":63,"target":62,"value":6},{"source":63,"target":57,"value":2},{"source":63,"target":58,"value":4},{"source":63,"target":61,"value":3},{"source":63,"target":60,"value":2},{"source":63,"target":55,"value":1},{"source":64,"target":55,"value":5},{"source":64,"target":62,"value":12},{"source":64,"target":48,"value":5},{"source":64,"target":63,"value":4},{"source":64,"target":58,"value":10},{"source":64,"target":61,"value":6},{"source":64,"target":60,"value":2},{"source":64,"target":59,"value":9},{"source":64,"target":57,"value":1},{"source":64,"target":11,"value":1},{"source":65,"target":63,"value":5},{"source":65,"target":64,"value":7},{"source":65,"target":48,"value":3},{"source":65,"target":62,"value":5},{"source":65,"target":58,"value":5},{"source":65,"target":61,"value":5},{"source":65,"target":60,"value":2},{"source":65,"target":59,"value":5},{"source":65,"target":57,"value":1},{"source":65,"target":55,"value":2},{"source":66,"target":64,"value":3},{"source":66,"target":58,"value":3},{"source":66,"target":59,"value":1},{"source":66,"target":62,"value":2},{"source":66,"target":65,"value":2},{"source":66,"target":48,"value":1},{"source":66,"target":63,"value":1},{"source":66,"target":61,"value":1},{"source":66,"target":60,"value":1},{"source":67,"target":57,"value":3},{"source":68,"target":25,"value":5},{"source":68,"target":11,"value":1},{"source":68,"target":24,"value":1},{"source":68,"target":27,"value":1},{"source":68,"target":48,"value":1},{"source":68,"target":41,"value":1},{"source":69,"target":25,"value":6},{"source":69,"target":68,"value":6},{"source":69,"target":11,"value":1},{"source":69,"target":24,"value":1},{"source":69,"target":27,"value":2},{"source":69,"target":48,"value":1},{"source":69,"target":41,"value":1},{"source":70,"target":25,"value":4},{"source":70,"target":69,"value":4},{"source":70,"target":68,"value":4},{"source":70,"target":11,"value":1},{"source":70,"target":24,"value":1},{"source":70,"target":27,"value":1},{"source":70,"target":41,"value":1},{"source":70,"target":58,"value":1},{"source":71,"target":27,"value":1},{"source":71,"target":69,"value":2},{"source":71,"target":68,"value":2},{"source":71,"target":70,"value":2},{"source":71,"target":11,"value":1},{"source":71,"target":48,"value":1},{"source":71,"target":41,"value":1},{"source":71,"target":25,"value":1},{"source":72,"target":26,"value":2},{"source":72,"target":27,"value":1},{"source":72,"target":11,"value":1},{"source":73,"target":48,"value":2},{"source":74,"target":48,"value":2},{"source":74,"target":73,"value":3},{"source":75,"target":69,"value":3},{"source":75,"target":68,"value":3},{"source":75,"target":25,"value":3},{"source":75,"target":48,"value":1},{"source":75,"target":41,"value":1},{"source":75,"target":70,"value":1},{"source":75,"target":71,"value":1},{"source":76,"target":64,"value":1},{"source":76,"target":65,"value":1},{"source":76,"target":66,"value":1},{"source":76,"target":63,"value":1},{"source":76,"target":62,"value":1},{"source":76,"target":48,"value":1},{"source":76,"target":58,"value":1}]};
force
.nodes(json.nodes)
.links(json.links)
.start();
var link = svg.selectAll(".link")
.data(json.links)
.enter().append("line")
.attr("class", "link");
var node = svg.selectAll(".node")
.data(json.nodes)
.enter().append("g")
.attr("class", "node")
.call(force.drag);
node.append("image")
.attr("xlink:href", "https://github.com/favicon.ico")
.attr("x", -8)
.attr("y", -8)
.attr("width", 16)
.attr("height", 16);
node.append("text")
.attr("dx", 12)
.attr("dy", ".35em")
.text(function(d) { return d.name });
force.on("tick", function() {
link.attr("x1", function(d) { return d.source.x; })
.attr("y1", function(d) { return d.source.y; })
.attr("x2", function(d) { return d.target.x; })
.attr("y2", function(d) { return d.target.y; });
node.attr("transform", function(d) { return "translate(" + d.x + "," + d.y + ")"; });
});
d3.select("#fname").on("input", function() {
var inputValue = this.value;
node.each(function (d) {
var highLight = "black";
if(d.name.toLowerCase() == inputValue.toLowerCase()) highLight = "red";
d3.select(this).style("fill", highLight);
});
});
input[type=text] {
width: 100%;
padding: 12px 20px;
margin: 8px 0;
box-sizing: border-box;
border: 2px solid red;
border-radius: 4px;
}
<script src="https://cdnjs.cloudflare.com/ajax/libs/d3/3.3.5/d3.min.js"></script>
<p>Text fields with borders:</p>
<form>
<label for="fname">Some Input</label>
<input type="text" id="fname" name="fname">
</form>

Drag, drop and fix a node in D3JS

I have a HTML File to display graphs using D3JS. The JSFiddle is in this link here. I know that I must use the function to enable the fixing of node position on dragging and dropping:
var drag = force.drag()
.on("dragstart", dragstart);
function dragstart(d) {
d3.select(this).classed("fixed", d.fixed = true);
}
However, on dragging and dropping a node, I am unable to fix the position. I want the same functionality as shown in this link .I don't want the node to revert to its original position. How do I change it?

From this example : http://bl.ocks.org/mbostock/3750558
You need to add a call to drag function :
var drag = force.drag()
.on("dragstart", dragstart);
Which is the following :
function dragstart(d) {
d3.select(this).classed("fixed", d.fixed = true);
}
The key point is setting d.fixed to true.
EDIT
In your fiddle you weren't calling node_drag. So you need to call that on the nodes like so :
var node = gnodes.append("circle")
.attr("class", "node")
.attr("r", 5)
.style("fill", function(d) {
thelistofcolors[d.group] = color(d.group);
return color(d.group); })
.call(node_drag); // <<<<<<<this line
And then change the tick to a function so you can call it later :
force.on("tick", tick);
function tick() {
link.attr("x1", function(d) { return d.source.x; })
.attr("y1", function(d) { return d.source.y; })
.attr("x2", function(d) { return d.target.x; })
.attr("y2", function(d) { return d.target.y; });
gnodes.attr("transform", function(d) {
return 'translate(' + [d.x, d.y] + ')';
});
};
Updated fiddle with all data showing (not filtered on click) : https://jsfiddle.net/vgy1s8k3/4/

The solution is to set a 'fixed' node property to true on dragstart, this will allow to append the position.
<!DOCTYPE html>
<html>
<head>
<script type="text/javascript" src="//d3js.org/d3.v3.min.js"></script>
<style>
.node {
stroke: #fff;
stroke-width: 1.5px;
}
.link {
stroke: #999;
stroke-opacity: .6;
}
</style>
</head>
<body>
<script>
var width = 1280,
height = 960;
var color = d3.scale.category20();
var force = d3.layout.force()
.charge(-120)
.linkDistance(30)
.size([width, height]);
var svg = d3.select("body").append("svg")
.attr("width", width)
.attr("height", height);
d3.json("graph.json", function(error, graph) {
if (error) throw error;
force
.nodes(graph.nodes)
.links(graph.links)
.start();
var link = svg.selectAll("graph.link")
.data(graph.links)
.enter().append("line")
.attr("class", "link")
.style("stroke-width", function(d) { return Math.sqrt(d.value); });
var node = svg.selectAll("graph.node")
.data(graph.nodes)
.enter().append("circle")
.attr("class", "node")
.attr("r", 5)
.style("fill", function(d) { return color(d.fill); })
.call(force.drag);
var drag = force.drag()
.on("dragstart", dragstart);
function dragstart(d) {
d.fixed = true;
}
node.append("title")
.text(function(d) { return d.name });
force.on("tick", tick);
function tick() {
link.attr("x1", function(d) { return d.source.x; })
.attr("y1", function(d) { return d.source.y; })
.attr("x2", function(d) { return d.target.x; })
.attr("y2", function(d) { return d.target.y; });
node.attr("transform", function(d) { return "translate(" + d.x + "," + d.y + ")"; });
};
});
</script>
</body>
</html>

Broken links in Force Layout with Threshold Slider in d3.js

I am trying to reproduce the example B is for breaking links in this tutorial.
This is the code I have so far :
output.json
The file output.json is in this link.
index.html
<!DOCTYPE html>
<meta charset="utf-8">
<style>
.node {
stroke: #fff;
stroke-width: 1.5px;
}
.link {
stroke: #999;
stroke-opacity: .6;
}
h3 {
color: #1ABC9C;
text-align:center;
font-style: italic;
font-size: 14px;
font-family: "Helvetica";
}
</style>
<body>
<script src="//d3js.org/d3.v3.min.js"></script>
<script>
var width = 960,
height = 500;
var color = d3.scale.category20();
var force = d3.layout.force()
.charge(-120)
.linkDistance(30)
.size([width, height]);
var svg = d3.select("body").append("svg")
.attr("width", width)
.attr("height", height);
var graphRec, node, link;
d3.json("output.json", function(error, graph) {
if (error) throw error;
graph = JSON.parse(JSON.stringify(graph));
force
.nodes(graph.nodes)
.links(graph.links)
.start();
graphRec = graph;
link = svg.selectAll(".link")
.data(graph.links)
.enter().append("line")
.attr("class", "link")
.style("stroke-width", function(d) { return Math.sqrt(d.value); });
node = svg.selectAll(".node")
.data(graph.nodes)
.enter().append("circle")
.attr("class", "node")
.attr("r", 5)
.style("fill", function(d) { return color(d.group); })
.call(force.drag);
node.append("title")
.text(function(d) { return d.name; });
force.on("tick", function() {
link.attr("x1", function(d) { return d.source.x; })
.attr("y1", function(d) { return d.source.y; })
.attr("x2", function(d) { return d.target.x; })
.attr("y2", function(d) { return d.target.y; });
node.attr("cx", function(d) { return d.x; })
.attr("cy", function(d) { return d.y; });
});
});
//adjust threshold
function threshold(thresh) {
graphRec.links.splice(0, graphRec.links.length);
for (var i = 0; i < graphRec.links.length; i++) {
if (graphRec.links[i].value > thresh) {graphRec.links.push(graphRec.links[i]);}
}
restart();
}
//Restart the visualisation after any node and link changes
function restart() {
link = link.data(graphRec.links);
link.exit().remove();
link.enter().insert("line", ".node").attr("class", "link");
node = node.data(graphRec.nodes);
node.enter().insert("circle", ".cursor").attr("class", "node").attr("r", 5).call(force.drag);
force.start();
}
</script>
<form>
<h3> Link threshold 0 <input type="range" id="thersholdSlider" name="points" value = 0 min="0" max="10" onchange="threshold(this.value)"> 10 </h3>
</form>
Now the graph looks as expected in the start, but when I try to move the slider, all the links are broken and all the nodes are detached.
Even when I get the slider back to 0, the links are still broken.
What is the problem ? And how can I fix it ?
Thanks!

It looks like you've overwritten references to 'graph' (the current graph) with 'graphRec' (the unfiltered version it uses to restore links) in the restart and threshold functions
Above version:
function threshold(thresh) {
graphRec.links.splice(0, graphRec.links.length);
for (var i = 0; i < graphRec.links.length; i++) {
if (graphRec.links[i].value > thresh) {graphRec.links.push(graphRec.links[i]);}
}
restart();
}
//Restart the visualisation after any node and link changes
function restart() {
link = link.data(graphRec.links);
link.exit().remove();
link.enter().insert("line", ".node").attr("class", "link");
node = node.data(graphRec.nodes);
node.enter().insert("circle", ".cursor").attr("class", "node").attr("r", 5).call(force.drag);
force.start();
}
Looking at the original example it should be:
function threshold(thresh) {
graph.links.splice(0, graph.links.length);
for (var i = 0; i < graphRec.links.length; i++) {
if (graphRec.links[i].value > thresh) {graph.links.push(graphRec.links[i]);}
}
restart();
}
//Restart the visualisation after any node and link changes
function restart() {
link = link.data(graph.links);
link.exit().remove();
link.enter().insert("line", ".node").attr("class", "link");
node = node.data(graph.nodes);
node.enter().insert("circle", ".cursor").attr("class", "node").attr("r", 5).call(force.drag);
force.start();
}
So what happens in your code is all the links are erased from graphRec.links by splicing them all out. Then it attempts to loop through that now empty array, but of course nothing happens. (Which is just as well, as the code would add them to the end of the same array, so it would keep increasing in size and the loop would never end.) Then in restart it joins that empty array to your graph so all your links disappear and will never return as the links have been erased from the underlying data.
So, restore the original code for the two functions is my answer.
PS assigning graphRec = graph to preserve a copy of the original graph won't work as it only makes a shallow copy, they would point to and edit the same arrays. You'd need to do graphRec = {links: graph.links.slice(), nodes: graph.nodes.slice()} or use the jsonifying method in the original code

d3.js Force Directed Tree with Labels

I am completely stuck adding labels to the force directed tree graph found here http://bl.ocks.org/mbostock/1138500
I have attempted to synthesize the force directed tree with other examples that include labels as well as following the answer to Add text label to d3 node in Force directed Graph and resize on hover but the graph always seems to break.
This code works for the force directed graph with labels and pictures
<!DOCTYPE html>
<meta charset="utf-8">
<style>
.link {
stroke: #ccc;
}
.node text {
pointer-events: none;
font: 10px sans-serif;
}
</style>
<body>
<script src="http://d3js.org/d3.v3.min.js"></script>
<script>
var width = 960,
height = 500
var svg = d3.select("body").append("svg")
.attr("width", width)
.attr("height", height);
var force = d3.layout.force()
.gravity(.05)
.distance(100)
.charge(-100)
.size([width, height]);
d3.json("graph.json", function(error, json) {
force
.nodes(json.nodes)
.links(json.links)
.start();
var link = svg.selectAll(".link")
.data(json.links)
.enter().append("line")
.attr("class", "link");
var node = svg.selectAll(".node")
.data(json.nodes)
.enter().append("g")
.attr("class", "node")
.call(force.drag);
node.append("image")
.attr("xlink:href", "https://github.com/favicon.ico")
.attr("x", -8)
.attr("y", -8)
.attr("width", 16)
.attr("height", 16);
node.append("text")
.attr("dx", 12)
.attr("dy", ".35em")
.text(function(d) { return d.name });
force.on("tick", function() {
link.attr("x1", function(d) { return d.source.x; })
.attr("y1", function(d) { return d.source.y; })
.attr("x2", function(d) { return d.target.x; })
.attr("y2", function(d) { return d.target.y; });
node.attr("transform", function(d) { return "translate(" + d.x + "," + d.y + ")"; });
});
});
</script>
However when I attempt to modify this to form a tree structure from Mike's example my code looks like this but does not work.
<!DOCTYPE html>
<meta charset="utf-8">
<style>
.link {
stroke: #ccc;
}
.node text {
pointer-events: none;
font: 10px sans-serif;
}
</style>
<body>
<script src="http://d3js.org/d3.v3.min.js"></script>
<script>
var width = 960,
height = 500
var svg = d3.select("body").append("svg")
.attr("width", width)
.attr("height", height);
var force = d3.layout.force()
.gravity(.05)
.distance(100)
.charge(-100)
.size([width, height]);
d3.json("test.json", function(error, json) {
force
.nodes(json.nodes)
.links(json.links)
.start();
var link = svg.selectAll(".link")
.data(json.links)
.enter().append("line")
.attr("class", "link");
var node = svg.selectAll(".node")
.data(json.nodes)
.enter().append("g")
.attr("class", "node")
.call(force.drag);
node.append("image")
.attr("xlink:href", "https://github.com/favicon.ico")
.attr("x", -8)
.attr("y", -8)
.attr("width", 16)
.attr("height", 16);
node.append("text")
.attr("dx", 12)
.attr("dy", ".35em")
.text(function(d) { return d.name });
force
.nodes(json.nodes)
.links(json.links)
.on("tick", tick)
.start();
function tick(e) {
// Push sources up and targets down to form a weak tree.
var k = 6 * e.alpha;
json.links.forEach(function(d, i) {
d.source.y -= k;
d.target.y += k;
});
node.attr("cx", function(d) { return d.x; })
.attr("cy", function(d) { return d.y; });
link.attr("x1", function(d) { return d.source.x; })
.attr("y1", function(d) { return d.source.y; })
.attr("x2", function(d) { return d.target.x; })
.attr("y2", function(d) { return d.target.y; });
}
});
</script>
I have tried and tried to resolve this but cannot combine the labels with the force directed graph, any assistance would be greatly appreciated, I've been beating my head against the wall on this for some time now...
Thanks!

The part missing from your sample code is the addition to the tick callback that decreases the y value of the source, and increases that of the target by a small amount each time.
Here's a jsfiddle example which I think does what you're after.
The key portion is the addition of a parameter, called e here, to the tick function, along with the lines
var k = 6 * e.alpha;
json.links.forEach(function(d, i) {
d.source.y -= k;
d.target.y += k;
});
The result looks like this, once you also increase the magnitude of the charge to push the nodes a little further away from each other:

Link between two nodes

I've seen this Javascript code that connects several nodes that it gets from a JSON file.
I'm very new to Javascript and JSON and I'd like you to help me make it connect two nodes with one edge.
Thanks!
index.html
<!DOCTYPE html>
<meta charset="utf-8">
<style>
.node {
stroke: #fff;
stroke-width: 1.5px;
}
.link {
stroke: #999;
stroke-opacity: .6;
}
</style>
<body>
<script src="http://d3js.org/d3.v3.min.js"></script>
<script>
var width = 960,
height = 500;
var color = d3.scale.category20();
var force = d3.layout.force()
.charge(-120)
.linkDistance(30)
.size([width, height]);
var svg = d3.select("body").append("svg")
.attr("width", width)
.attr("height", height);
d3.json("miserables1.json", function(error, graph) {
force
.nodes(graph.nodes)
.links(graph.links)
.start();
var link = svg.selectAll(".link")
.data(graph.links)
.enter().append("line")
.attr("class", "link")
.style("stroke-width", function(d) { return Math.sqrt(d.value); });
var node = svg.selectAll(".node")
.data(graph.nodes)
.enter().append("circle")
.attr("class", "node")
.attr("r", 5)
.style("fill", function(d) { return color(d.group); })
.call(force.drag);
node.append("title")
.text(function(d) { return d.name; });
force.on("tick", function() {
link.attr("x1", function(d) { return d.source.x; })
.attr("y1", function(d) { return d.source.y; })
.attr("x2", function(d) { return d.target.x; })
.attr("y2", function(d) { return d.target.y; });
node.attr("cx", function(d) { return d.x; })
.attr("cy", function(d) { return d.y; });
});
});
</script>
miserables.json
{
"nodes":[
{"name":"Myriel","group":1},
{"name":"Napoleon","group":1},
{"name":"Mlle.Baptistine","group":1},
{"name":"Mme.Magloire","group":1},
{"name":"CountessdeLo","group":1},
{"name":"Geborand","group":1},
{"name":"Champtercier","group":1},
{"name":"Cravatte","group":1},
{"name":"Count","group":1},
{"name":"OldMan","group":1},
{"name":"Labarre","group":2},
{"name":"Valjean","group":2},
{"name":"Marguerite","group":3},
{"name":"Mme.deR","group":2},
{"name":"Isabeau","group":2},
{"name":"Gervais","group":2},
{"name":"Tholomyes","group":3},
{"name":"Listolier","group":3},
{"name":"Fameuil","group":3},
{"name":"Blacheville","group":3},
{"name":"Favourite","group":3},
{"name":"Dahlia","group":3},
{"name":"Zephine","group":3},
{"name":"Fantine","group":3},
{"name":"Mme.Thenardier","group":4},
{"name":"Thenardier","group":4},
{"name":"Cosette","group":5},
{"name":"Javert","group":4},
{"name":"Fauchelevent","group":0},
{"name":"Bamatabois","group":2},
{"name":"Perpetue","group":3},
{"name":"Simplice","group":2},
{"name":"Scaufflaire","group":2},
{"name":"Woman1","group":2},
{"name":"Judge","group":2},
{"name":"Champmathieu","group":2},
{"name":"Brevet","group":2},
{"name":"Chenildieu","group":2},
{"name":"Cochepaille","group":2},
{"name":"Pontmercy","group":4},
{"name":"Boulatruelle","group":6},
{"name":"Eponine","group":4},
{"name":"Anzelma","group":4},
{"name":"Woman2","group":5},
{"name":"MotherInnocent","group":0},
{"name":"Gribier","group":0},
{"name":"Jondrette","group":7},
{"name":"Mme.Burgon","group":7},
{"name":"Gavroche","group":8},
{"name":"Gillenormand","group":5},
{"name":"Magnon","group":5},
{"name":"Mlle.Gillenormand","group":5},
{"name":"Mme.Pontmercy","group":5},
{"name":"Mlle.Vaubois","group":5},
{"name":"Lt.Gillenormand","group":5},
{"name":"Marius","group":8},
{"name":"BaronessT","group":5},
{"name":"Mabeuf","group":8},
{"name":"Enjolras","group":8},
{"name":"Combeferre","group":8},
{"name":"Prouvaire","group":8},
{"name":"Feuilly","group":8},
{"name":"Courfeyrac","group":8},
{"name":"Bahorel","group":8},
{"name":"Bossuet","group":8},
{"name":"Joly","group":8},
{"name":"Grantaire","group":8},
{"name":"MotherPlutarch","group":9},
{"name":"Gueulemer","group":4},
{"name":"Babet","group":4},
{"name":"Claquesous","group":4},
{"name":"Montparnasse","group":4},
{"name":"Toussaint","group":5},
{"name":"Child1","group":10},
{"name":"Child2","group":10},
{"name":"Brujon","group":4},
{"name":"Mme.Hucheloup","group":8}
],
"links":[
{"source":1,"target":0,"value":1},
{"source":2,"target":0,"value":8},
{"source":3,"target":0,"value":10},
{"source":3,"target":2,"value":6},
{"source":4,"target":0,"value":1},
{"source":5,"target":0,"value":1},
{"source":6,"target":0,"value":1},
{"source":7,"target":0,"value":1},
{"source":8,"target":0,"value":2},
{"source":9,"target":0,"value":1},
{"source":11,"target":10,"value":1},
{"source":11,"target":3,"value":3},
{"source":11,"target":2,"value":3},
{"source":11,"target":0,"value":5},
{"source":12,"target":11,"value":1},
{"source":13,"target":11,"value":1},
{"source":14,"target":11,"value":1},
{"source":15,"target":11,"value":1},
{"source":17,"target":16,"value":4},
{"source":18,"target":16,"value":4},
{"source":18,"target":17,"value":4},
{"source":19,"target":16,"value":4},
{"source":19,"target":17,"value":4},
{"source":19,"target":18,"value":4},
{"source":20,"target":16,"value":3},
{"source":20,"target":17,"value":3},
{"source":20,"target":18,"value":3},
{"source":20,"target":19,"value":4},
{"source":21,"target":16,"value":3},
{"source":21,"target":17,"value":3},
{"source":21,"target":18,"value":3},
{"source":21,"target":19,"value":3},
{"source":21,"target":20,"value":5},
{"source":22,"target":16,"value":3},
{"source":22,"target":17,"value":3},
{"source":22,"target":18,"value":3},
{"source":22,"target":19,"value":3},
{"source":22,"target":20,"value":4},
{"source":22,"target":21,"value":4},
{"source":23,"target":16,"value":3},
{"source":23,"target":17,"value":3},
{"source":23,"target":18,"value":3},
{"source":23,"target":19,"value":3},
{"source":23,"target":20,"value":4},
{"source":23,"target":21,"value":4},
{"source":23,"target":22,"value":4},
{"source":23,"target":12,"value":2},
{"source":23,"target":11,"value":9},
{"source":24,"target":23,"value":2},
{"source":24,"target":11,"value":7},
{"source":25,"target":24,"value":13},
{"source":25,"target":23,"value":1},
{"source":25,"target":11,"value":12},
{"source":26,"target":24,"value":4},
{"source":26,"target":11,"value":31},
{"source":26,"target":16,"value":1},
{"source":26,"target":25,"value":1},
{"source":27,"target":11,"value":17},
{"source":27,"target":23,"value":5},
{"source":27,"target":25,"value":5},
{"source":27,"target":24,"value":1},
{"source":27,"target":26,"value":1},
{"source":28,"target":11,"value":8},
{"source":28,"target":27,"value":1},
{"source":29,"target":23,"value":1},
{"source":29,"target":27,"value":1},
{"source":29,"target":11,"value":2},
{"source":30,"target":23,"value":1},
{"source":31,"target":30,"value":2},
{"source":31,"target":11,"value":3},
{"source":31,"target":23,"value":2},
{"source":31,"target":27,"value":1},
{"source":32,"target":11,"value":1},
{"source":33,"target":11,"value":2},
{"source":33,"target":27,"value":1},
{"source":34,"target":11,"value":3},
{"source":34,"target":29,"value":2},
{"source":35,"target":11,"value":3},
{"source":35,"target":34,"value":3},
{"source":35,"target":29,"value":2},
{"source":36,"target":34,"value":2},
{"source":36,"target":35,"value":2},
{"source":36,"target":11,"value":2},
{"source":36,"target":29,"value":1},
{"source":37,"target":34,"value":2},
{"source":37,"target":35,"value":2},
{"source":37,"target":36,"value":2},
{"source":37,"target":11,"value":2},
{"source":37,"target":29,"value":1},
{"source":38,"target":34,"value":2},
{"source":38,"target":35,"value":2},
{"source":38,"target":36,"value":2},
{"source":38,"target":37,"value":2},
{"source":38,"target":11,"value":2},
{"source":38,"target":29,"value":1},
{"source":39,"target":25,"value":1},
{"source":40,"target":25,"value":1},
{"source":41,"target":24,"value":2},
{"source":41,"target":25,"value":3},
{"source":42,"target":41,"value":2},
{"source":42,"target":25,"value":2},
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