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How can I control the mouse scroll event and after that do an animation on the html, body?

I'm facing a very strange error, which is animation on body during mouse scroll. I think its happening because of the jQuery event window.scroll. I have tried a lot of things like unbinding of animation on mouse scroll, but nothing works. Below is my code.
$(document).on("scroll", function () {
var lastScrollTop = 0;
var windowHeight = $(window).scrollTop();
var seccion1 = $("#seccion1").height();
var seccion2 = $("#seccion2").offset().top;
var alturaseccion2 = $("#seccion2").height();
//this function returns in which section is the user with the scroll
var localizacion = comprobarSeccion(seccion1, seccion2);
if (windowHeight > lastScrollTop) {
// down scroll
console.log("scrollabajo");
if (localizacion == 1) {
$("html, body").animate({
scrollTop: $("#seccion2").offset().top
}, 2);
$(document).bind("scroll");
} else if (localizacion == 2) {
if (windowHeight >= ((alturaseccion2 * 0.80) + seccion2) && windowHeight <= (alturaseccion2 + seccion2)) {
} else {
}
}
} else {
// up scroll
console.log("scrollarriba");
}
lastScrollTop = windowHeight;
});
´´´

I'm not sure what you are trying to accomplish, but if your trying to trigger an event with a specific scroll value you can use the code below
$(window).scroll(function () {
var scroll = $(window).scrollTop();
if (scroll >= 500) {
alert("scroll is greater than 500 px)
} else if(scroll==500){
alert("scroll has hit 500px");
}
});

JS Scroll window while mouseover

I would like to scroll up or down the window while the mouse is over a specific element.
What I have so far basically works but it's not "smooth". It starts and stops on and on, not looking nice. Do you have any idea how to make a more constant smooth scrolling?
This is my code:
doScroll = 0;
$(".helperDown").mouseenter(function() {
scrollHandler = setInterval( function() {
console.log('scrolling down...');
if(doScroll == 0) {
doScroll = 1;
$("html, body").animate({scrollTop: fromTop+50}, 200, 'linear', function() {
doScroll = 0;
});
}
}, 200);
});
$(".helperDown").mouseleave(function() {
clearInterval(scrollHandler);
});
.helperDown is the area where the mouse has to be in to start scrolling. fromTop is always recalculated after a scroll event.

You can not start a series of animation and expect a smooth scrolling. What you need is to start one animation only by pre-calculating the distance this animation will cover. Also, jQuery has a nice wrapper for mouseenter and mouseleave -combined. It's the hover() function with two functions as its parameter. The following code block will solve your issue.
Also, this plnkr has both the up and down scroll feature:
https://plnkr.co/edit/WoneJ8?p=preview
$(function () {
// change this value as per your need
var distancePerSec = 1000;
$(".helperDown").hover(function () {
var h = $("body").height();
var targetScrollTop = h - $(window).height();
var distanceToTravel = targetScrollTop - $(window).scrollTop();
var animationDuration = (distanceToTravel / distancePerSec) * 1000;
$("html, body").animate({
scrollTop: targetScrollTop
}, animationDuration, 'linear');
}, function () {
// stop the animation
$("html, body").stop();
});
})

Trigger when scroll stopped by percent

I need to trigger when user stop scrolling and alert some message. But I need to trigger it by percent.
For example I want to alert to user some message if he scroll, but when he stop scrolling and if he scroled more then 80% of window.
I have this code which trigger when srcoll is stopped and don't know how to get this work with scroll percen:
$.fn.scrollStopped = function(callback) {
$(this).scroll(function(){
var self = this, $this = $(self);
if ($this.data('scrollTimeout')) {
clearTimeout($this.data('scrollTimeout'));
}
$this.data('scrollTimeout', setTimeout(callback,250,self));
});
};
jQuery(window).scrollStopped(function(){
alert('stopped');
});

You can calculate the height of document and window, and then compare it with the current vertical position of the scroll bar:
$.fn.scrollStopped = function(callback) {
$(this).scroll(function(){
var self = this, $this = $(self);
if ($this.data('scrollTimeout')) {
clearTimeout($this.data('scrollTimeout'));
}
$this.data('scrollTimeout', setTimeout(callback,250,self));
});
};
jQuery(window).scrollStopped(function(){
console.log(jQuery(window).scrollTop());
if($(window).scrollTop() > ($(document).height() - $(window).height())*0.8){
alert('You have scrolled more than 80%');
}
});
Try it yourself. You probably want to read more details about both functions; .scrollTop() and .height().

DEMO: http://jsfiddle.net/A9dB2/
jQuery(window).scrollStopped(function(){
var docH = $(document).height();
var winH = $(window).height();
var scrollTop = $(this).scrollTop()
var totalPixels = docH - winH;
var scrollPercentage = parseFloat(scrollTop/totalPixels * 100).toFixed(2);
alert(scrollPercentage + "%");
});

scroll to next div already in browser

I have a series of divs that are 100% height with a scroll to function that takes you to the next div out of the viewport on background click. However, if the next div is already slightly in the viewport the whole thing is counted as being visible and the scroll to bypasses it. Can anyone offer direction on how to get the script to scroll to the div even if it's partially in the viewport already?
Codepen here.
If you begin scrolling slightly in the codepen and then click on the background you'll see that it doesnt scroll you to the div that's already in the viewport but the div after that.
$(document).ready(function() {
// get initial nav height
var $window = $(window);
var wst = $window.scrollTop();
var th = $('div.top').height();
var currentSlide = $('#wrapper').data( 'current-slide', $('div.slide').eq(0) );
$('div.scroll_images').css({ height: 'auto', overflow: 'visible', top: 0 });
$('div.scroll_images div.inner').css({ position: 'absolute', top: 0 });
$('div.slide').each(function() {
$(this).css('padding',function() {
return (($(window).height()-$(this).height())/2)+'px 0'
});
});
// scrollto for click on slide
jQuery.fn.scrollTo = function(hash) {
$this = $(this);
st = $this.offset().top - th; // subtract nav height
$('html, body').animate({ scrollTop: st }, 550
);
}
$('#wrapper').click(function(e){
//get the current slide index from the body tag.
$this = currentSlide.data( 'current-slide' );
$next = $(".slide:below-the-fold");
if($next.length) {
$next.scrollTo($next.attr('id'));
//Save the next slide as the current.
$('#wrapper').data( 'current-slide', $next );
} else {
//Throw us back to the top.
$('div.slide:first').scrollTo($('div.slide:first').attr('id'));
//Save the first slide as the first slide, which
//Cycles us back to the top.
$('#wrapper').data( 'current-slide', $('div.slide:first'));
}
})
//Images fade in
$('img').hide();
$('img').each(function(i) {
if (this.complete) {
$(this).fadeIn();
} else {
$(this).load(function() {
$(this).fadeIn();
});
}
});
//Stop links affecting scroll function
$("a").click(function(e) {
e.stopPropagation();
});
});
(function($) {
$.belowthefold = function(element, settings) {
var fold = $(window).height() + $(window).scrollTop();
return fold <= $(element).offset().top - settings.threshold;
};
$.extend($.expr[':'], {
"below-the-fold": function(a, i, m) {
return $.belowthefold(a, {threshold : 0});
}
});
})(jQuery);

Here's what I might try to do: go through each div in the series. Find the div who's offset() is closest to $(window).scrollTop(). Now, find the next() div after the "current" one and scroll to it.
For comparing the offset() of each div, try something like this:
var closest = $('[selector]:first');
$('[selector]').each(function() {
var oldDistance = Math.abs(closest.offset() - $(window).scrollTop());
var newDistance = Math.abs($(this).offset() - $(window).scrollTop());
if(newDistance < oldDistance) {
closest = $(this);
}
}

Firing an animation when aligned

I am creating a splitscrolling website and it's working great. But i have one problem, when the user stops scrolling it fires a function called alignWhenIdle and what this does is align the columns so they become "one".
Now that is working nicely but i can't seem to target a specific part of the column that aligns. let's say when the number 2 column aligns ( see image ) i want to be able to fire an animation. I tried using a callback but that fires a function every time the columns are aligned.
This is my JS:
(function ($) {
var top = 0;
var contentHeight, contents, totalHeight;
var locked = false;
var timeout;
var align = function () {
var pos = (top + $(window).scrollTop());
var snapUp = 0 - (pos % contentHeight) < (contentHeight / 2);
var multiplier = snapUp
? Math.ceil(pos / contentHeight)
: Math.floor(pos / contentHeight);
var newTop = contentHeight * multiplier;
$('html, body').animate({ scrollTop: newTop + totalHeight }, 200);
locked = false;
};
var reset = function () {
contentHeight = $('.right').height();
contents = $('.right > .content').length;
totalHeight = contentHeight * (contents - 1);
top = (0 - totalHeight);
};
var scrollRight = function () {
$('.right').css('top', (top + $(window).scrollTop()) + 'px');
};
var alignWhenIdle = function (delay) {
clearTimeout(timeout);
timeout = setTimeout(align, delay);
};
$(document).on('ready', function () {
reset();
scrollRight();
});
$(window).on('scroll', function () {
locked = true;
scrollRight();
});
$(window).on('mouseup', function (e) {
if (locked) {
align();
}
});
$(window).resize(function () {
locked = true;
reset();
scrollRight();
alignWhenIdle(300);
});
$(window).on('mousewheel', function (e) {
alignWhenIdle(300);
});
$(window).on("keyup", function (e) {
alignWhenIdle(300);
});
})(jQuery);
http://jsfiddle.net/ev3B8/
Any help is much appreciated,
Cheers

See http://jsfiddle.net/5T9Y8/
Scroll till the column 2 and see result...
In the method align I've added a callback:
$('html, body').animate({ scrollTop: newTop + totalHeight }, 200, function(){
$(".animate").animate({ marginLeft: "200px" },300);
});
Works well, did you need exactly that?
EDIT
You should just check for some condition.
E.g. based on this solution Check if element is visible after scrolling you can build this:
$('html, body').animate({ scrollTop: newTop + totalHeight }, 200, function(){
if (isScrolledIntoView(".animate")) $(".animate").animate({ marginLeft: "200px" },300);
});
See updated solution here http://jsfiddle.net/5T9Y8/1/
This is only one way, I'm really sure there is a way to do it even better. E.g. you can calculate the current elements which are shown and then just find the things only inside of them.

I tried using a callback but that fires a function every time the columns are aligned.
Use one method for functioning only once instead of on.